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Answer: nightmare to make custom txdb for genomes from ToxoDB
by
James W. MacDonald
67k
Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…
Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
by
Gordon Smyth
52k
Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…
Comment: Error in get_anno_data(ontology) : ontology not supported yet...
by
GODseeker
•
0
thank u so much ,god bless u,my dear friend.
Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
•
0
Hi @gordonsmyth and @weishi,
Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
•
0
Hi Tim,
Thanks for your reply!
Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …
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